Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
HNSC rs2691682 chr15:31134593 A/C 1.05E-5 512 22.83 20.03 12.07 KM Plot
HNSC rs28369949 chr2:100078760 C/T 3.04E-6 514 22.42 20.1 7.17 KM Plot
HNSC rs28379921 chr1:248528453 G/A 4.22E-5 515 22.2 22.67 13.43 KM Plot
HNSC rs28382945 chr2:100028555 C/T 3.8E-8 513 22.58 20.1 7 KM Plot
HNSC rs28382947 chr2:100028475 C/T 3.14E-8 514 22.58 20.15 7 KM Plot
HNSC rs2839370 chr21:48057628 A/G 5.69E-9 510 21.65 20.2 2.73 KM Plot
HNSC rs2839376 chr21:48072916 G/A 4.71E-9 513 21.52 21.02 2.73 KM Plot
HNSC rs28405645 chr1:248525647 C/A 4.07E-5 515 22.15 22.75 13.43 KM Plot
HNSC rs28415565 chr1:248525053 A/T 4.22E-5 515 22.2 22.67 13.43 KM Plot
HNSC rs28434510 chr1:248527071 T/A 4.22E-5 515 22.2 22.67 13.43 KM Plot
HNSC rs28450223 chr1:248527879 T/C 4.22E-5 515 22.2 22.67 13.43 KM Plot
HNSC rs28491677 chr1:248525060 T/A 4.34E-5 514 22.22 22.67 13.43 KM Plot
HNSC rs28507949 chr1:248527311 A/C 4.22E-5 515 22.2 22.67 13.43 KM Plot
HNSC rs28536060 chr1:248527489 G/A 4.22E-5 515 22.2 22.67 13.43 KM Plot
HNSC rs28557295 chr1:248526693 A/C 4.22E-5 515 22.2 22.67 13.43 KM Plot